PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007333
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 223aa    MW: 24462.8 Da    PI: 6.9794
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007333genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.2e-39101101100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa+dC++apyf+++q p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+a+l ++
  DCAR_007333  10 PCGACKFLRRKCATDCIFAPYFCSDQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQAQLMQV 107
                  7*************************99*******************************************************************999 PP

       DUF260  98 kee 100
                  k++
  DCAR_007333 108 KSQ 110
                  987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7819111IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3810108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAAASGTSSP CGACKFLRRK CATDCIFAPY FCSDQGPARF AAIHKVFGAS NVSKLLLHVP  60
VADRCEAVVT IAYEAQARIR DPVYGCVAHI FALQQQVAYL QAQLMQVKSQ MTQSLIDSRT  120
SEIQWSGNMC MGGNGMQTTL PPAYDNYSSH SSAKNEYMNS VSPQSSMESG DYGNEGMNMQ  180
EIQSRDDQLM LLIQNAMKRP PDSFSPTEYG ELQSLAHRMM RN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781596.17e-96PREDICTED: LOB domain-containing protein 16
RefseqXP_016439562.17e-96PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB77e-71LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A067FM802e-96A0A067FM80_CITSI; Uncharacterized protein
STRINGVIT_07s0005g03030.t011e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-60lateral organ boundaries-domain 16